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ViewRNA - Complete Bibliography (Updated 05-05-2014) PDF


Akhavanfard S., et al. Inactivation of the tumor suppressor WTX in a subset of pediatric tumors. Genes Chromosomes Cancer 53(1):67-77 (2014).

Chung H. C., et al. Inhibition of porcine endogenous retrovirus in PK15 cell line by efficient multitargeting RNA interference. Transpl Int 27(1):96-105 (2014).

Dill M. T., et al. Pegylated IFN-alpha regulates hepatic gene expression through transient Jak/STAT activation. J Clin Invest 124(4):1568-81 (2014).

Dudek H., et al. Knockdown of beta-catenin with dicer-substrate siRNAs reduces liver tumor burden in vivo. Mol Ther 22(1):92-101 (2014).

Duong F. H. T., et al. IFN-λ receptor 1 expression is induced in chronic hepatitis C and correlates with the IFN-λ3 genotype and with nonresponsiveness to IFN-α therapies. J. Exp. Med. (2014).

Epstein I., et al. Alternative polyadenylation and differential expression of Shank mRNAs in the synaptic neuropil. Philosophical Transactions of the Royal Society B: Biological Sciences 369(1633) (2014).

Farkas D., et al. CXCR4 inhibition ameliorates severe obliterative pulmonary hypertension and accumulation of C-kit(+) cells in rats. PLoS ONE 9(2):e89810 (2014).

Fujii E., et al. Histopathological characteristics of human non-tumor thyroid tissues in a long-term model of adenomatous goiter xenografts in the NOD/Shi-scid, IL-2Rgamma(null) mouse. Exp Toxicol Pathol 66(4):203-9 (2014).

Guo S., et al. Antisense oligonucleotide treatment ameliorates alpha-1 antitrypsin-related liver disease in mice. J Clin Invest 124(1):251-61 (2014).

Han K., et al. Parallel measurement of dynamic changes in translation rates in single cells. Nat Methods 11(1):86-93 (2014).

Holembowski L., et al. TAp73 is essential for germ cell adhesion and maturation in testis. J Cell Biol 204(7):1173-90 (2014).

Hong L., et al. Expression of Heparanase Is Associated with Breed-Specific Morphological Characters of Placental Folded Bilayer Between Yorkshire and Meishan Pigs. Biol. Reprod. 90(3):56, 1-9 (2014).

Keijsers R. R., et al. In Vivo Induction of Cutaneous Inflammation Results in the Accumulation of Extracellular Trap-Forming Neutrophils Expressing RORgammat and IL-17. J Invest Dermatol 134(5):1276-84 (2014).

Mahfoud O. K., et al. Detection of ErbB2: nanotechnological solutions for clinical diagnostics. RSC Advances 4:3422-42 (2014).

Matsushita K., et al. Chemokine (C-C motif) Receptor 5 Is an Important Pathological Regulator in the Development and Maintenance of Neuropathic Pain. Anesthesiology Online First(10.1097/ALN.0000000000000190 (2014).

Minami H., et al. Background Coloration of Squamous Epithelium in Esophago-Pharyngeal Squamous Cell Carcinoma: What Causes the Color Change? PLoS ONE 9(1):e85553 (2014).

Mlecnik B., et al. Functional network pipeline reveals genetic determinants associated with in situ lymphocyte proliferation and survival of cancer patients. Sci Transl Med 6(228):228ra37 (2014).

Moldovan L., et al. A Module of Human Peripheral Blood Mononuclear Cell Transcriptional Network Containing Primitive and Differentiation Markers Is Related to Specific Cardiovascular Health Variables. PLoS ONE 9(4):e95124 (2014).

O'Malley K. J., et al. Proteomic analysis of patient tissue reveals PSA protein in the stroma of benign prostatic hyperplasia. Prostate (2014).

Oude Ophuis R. J., et al. Cannabinoid, melanocortin and opioid receptor expression on DRD1 and DRD2 subpopulations in rat striatum. Front Neuroanat 8:14 (2014).

Roux B., et al. An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser-capture microdissection coupled to RNA sequencing. The Plant Journal 77(6):817-37 (2014).

Torata N., et al. Tissue tablet method: an efficient tissue banking procedure applicable to both molecular analysis and frozen tissue microarray. Hum Pathol 45(1):143-52 (2014).

Turner N., et al. Can Biomarker Assessment on Circulating Tumor Cells Help Direct Therapy in Metastatic Breast Cancer? Cancers 6(2):684-707 (2014).

Turunen M. P., et al. Epigenetic upregulation of endogenous VEGF-A reduces myocardial infarct size in mice. PLoS ONE 9(2):e89979 (2014).

Wieland S. F., et al. Limited hepatitis B virus replication space in the chronically hepatitis C virus-infected liver. J Virol 88(9):5184-8 (2014).

Wollberg A. R., et al. Pharmacological inhibition of the chemokine receptor CX3CR1 attenuates disease in a chronic-relapsing rat model for multiple sclerosis. PNAS 111(14):5409-14 (2014).

Won K. J., et al. Human Noxin is an anti-apoptotic protein in response to DNA damage of A549 non-small cell lung carcinoma. Int J Cancer 134(11):2595-604 (2014).

Wright C. B., et al. The Rpe65rd12 Allele Exerts a Semidominant Negative Effect on Vision in Mice. Invest Ophthalmol Vis Sci 55(4):2500-15 (2014).

Yoshimura H., et al. Cellular Sources of Tenascin-C in Canine Mammary Carcinomas. Vet Pathol (2014).


Anthony S. J., et al. Identification of a novel cetacean polyomavirus from a common dolphin (Delphinus delphis) with Tracheobronchitis. PLoS ONE 8(7):e68239 (2013).

Battich N., Stoeger T. and Pelkmans L. Image-based transcriptomics in thousands of single human cells at single-molecule resolution. Nat Meth (2013).

Bogdanik L. P., et al. Loss of the E3 ubiquitin ligase LRSAM1 sensitizes peripheral axons to degeneration in a mouse model of Charcot-Marie-Tooth disease. Dis Model Mech (2013).

Choi P. et al. IGF-2 mediates intestinal mucosal hyperplasia in retinoblastoma protein (Rb)-deficient mice. J Pediatr Surg 48(6):1340-7 (2013).

Goi Y., et al. Effects of silodosin, a selective alpha 1A -adrenoceptor antagonist, on bladder blood flow and bladder function in a rat model of atherosclerosis-induced chronic bladder ischemia without bladder outlet obstruction. J Urol (2013).

Gutschner T., et al. The noncoding RNA MALAT1 is a critical regulator of the metastasis phenotype of lung cancer cells. Cancer Res 73(3):1180-1189 (2013).

Kanno J., et al. Oral administration of pentachlorophenol induces interferon signaling mRNAs in C57BL/6 male mouse liver. J Toxicol Sci 38(4):643-54 (2013).

Kauder S. E., et al. Functional consequences of the macrophage stimulating protein 689C inflammatory bowel disease risk allele. PLoS ONE 8(12):e83958 (2013).

Koyuncu O. O., et al. Efficient retrograde transport of pseudorabies virus within neurons requires local protein synthesis in axons. Cell Host Microbe 13(1):54-66 (2013).

Kuribayashi S., et al. Excessive cytokine response to rapid proliferation of highly pathogenic avian influenza viruses leads to fatal systemic capillary leakage in chickens. PLoS ONE 8(7):e68375 (2013).

Kwon S. Single-molecule fluorescence in situ hybridization: quantitative imaging of single RNA molecules. BMB Rep 46(2):65-72 (2013).

Lee H., et al. Zinc-finger antiviral protein mediates retinoic acid inducible gene I-like receptor-independent antiviral response to murine leukemia virus. Proc Natl Acad Sci U S A 110(30):12379-84 (2013).

Li Y., et al. Competing and noncompeting activities of miR-122 and the 5′ exonuclease Xrn1 in regulation of hepatitis C virus replication. Proceedings of the National Academy of Sciences 110(5):1881-1886 (2013).

Mao D., et al. ATF3 expression in the corpus luteum: possible role in luteal regression(dagger). Mol Endocrinol 27(12):2066-79 (2013).

Miyajima M., et al. Leucine-rich alpha2-glycoprotein is a novel biomarker of neurodegenerative disease in human cerebrospinal fluid and causes neurodegeneration in mouse cerebral cortex. PLoS ONE 8(9):e74453 (2013).

Mustafi D., et al. Evolutionarily conserved long intergenic non-coding RNAs in the eye. Hum Mol Genet (2013).

Nakatsu Y., et al. Intracellular Transport of the Measles Virus Ribonucleoprotein Complex Is Mediated by Rab11A-Positive Recycling Endosomes and Drives Virus Release from the Apical Membrane of Polarized Epithelial Cells. J Virol 87(8):4683-93 (2013).

Patra C., et al. Organ-specific function of adhesion G protein-coupled receptor GPR126 is domain-dependent. PNAS 110(42):16898-903 (2013).

Petrillo J. E., et al. Cytoplasmic granule formation and translational inhibition of nodaviral RNAs in the absence of the double-stranded RNA binding protein B2. J Virol 87(24):13409-21 (2013).

Ramos A. D., et al. Integration of Genome-wide Approaches Identifies lncRNAs of Adult Neural Stem Cells and Their Progeny In Vivo. Cell Stem Cell 12(5):616-28 (2013).

Rheinbay E., et al. An Aberrant Transcription Factor Network Essential for Wnt Signaling and Stem Cell Maintenance in Glioblastoma. Cell Reports 3(5):1567-79 (2013).

Rupanagudi K. V., et al. Cathepsin S inhibition suppresses systemic lupus erythematosus and lupus nephritis because cathepsin S is essential for MHC class II-mediated CD4 T cell and B cell priming. Ann. Rheum. Dis. (2013).

Seimon T. A., et al. Canine Distemper Virus: an Emerging Disease in Wild Endangered Amur Tigers (Panthera tigris altaica). MBio 4(4):(2013).

Shalek A. K., et al. Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells. Nature 498(7453):236-40 (2013).

Solga A. C., et al. NG2-cells are not the cell of origin for murine neurofibromatosis-1 (Nf1) optic glioma. Oncogene (2013).

Taylor A. M., et al. Axonal Translation of beta-Catenin Regulates Synaptic Vesicle Dynamics. J Neurosci 33(13):5584-9 (2013).

Weier C., et al. Nucleotide resolution analysis of TMPRSS2 and ERG rearrangements in prostate cancer. Journal of Pathology (2013).

Wieland S., et al. Simultaneous detection of hepatitis C virus and interferon stimulated gene expression in infected human liver. Hepatology (2013).

Will T. J., et al. Deep sequencing and high-resolution imaging reveal compartment-specific localization of Bdnf mRNA in hippocampal neurons. Sci Signal 6(306):rs16 (2013).

Yu M., et al. Circulating Breast Tumor Cells Exhibit Dynamic Changes in Epithelial and Mesenchymal Composition. Science 339(6119):580-4 (2013).


Anthony S. J., et al. Emergence of fatal avian influenza in new England harbor seals. MBio 3(4) (2012).

Cajigas I. J., et al. The local transcriptome in the synaptic neuropil revealed by deep sequencing and high-resolution imaging. Neuron 74(3):453-66 (2012).

Capua I., et al. Influenza A viruses grow in human pancreatic cells and cause pancreatitis and diabetes in an animal model. J Virol (2012).

Dreux M., et al. Short-range exosomal transfer of viral RNA from infected cells to plasmacytoid dendritic cells triggers innate immunity. Cell Host Microbe 12(4):558-70 (2012).

Everitt A. R., et al. IFITM3 restricts the morbidity and mortality associated with influenza. Nature (2012).

Frolova E. G., et al. Thrombospondin-4 regulates fibrosis and remodeling of the myocardium in response to pressure overload. Faseb J 26(6):2363-73 (2012).

Garaigorta U., et al. Hepatitis C virus (HCV) induces formation of stress granules whose proteins regulate HCV RNA replication and virus assembly and egress. J Virol 86(20):11043-56 (2012).

Hurtado M. D., et al. Distribution of Y-Receptors in Murine Lingual Epithelia. PLoS One 7(9):e46358 (2012).

Louzada S., Adega F., Chaves R. Defining the sister rat mammary tumor cell lines HH-16 cl.2/1 and as an in vitro cell model for Erbb2. PLoS ONE 7(1):e29923 (2012).

Nakagawa N., et. al. The intrinsic prostaglandin E2–EP4 system of the renal tubular epithelium limits the development of tubulointerstitial fibrosis in mice. Kidney Int (2012).

Plant L. D., et al. SUMOylation Silences Heterodimeric TASK Potassium Channels Containing K2P1 Subunits in Cerebellar Granule Neurons. Sci Signal 5(251):ra84 (2012).

Rhinn H., et al. Alternative alpha-synuclein transcript usage as a convergent mechanism in Parkinson's disease pathology. Nat Commun 3:1084 (2012).

Seimon T. A., et al. A novel herpesvirus in 3 species of pheasants: mountain peacock pheasant (Polyplectron inopinatum), Malayan peacock pheasant (Polyplectron malacense), and Congo peafowl (Afropavo congensis). Vet Pathol 49(3):498-91 (2012).

Tom Dieck S., et al. Metabolic labeling with noncanonical amino acids and visualization by chemoselective fluorescent tagging. Curr Protoc Cell Biol Chapter 7: Unit7 11 (2012).

Urdinguio R. G., et al. Immune dependent and independent anti-tumor activity of GM-CSF aberrantly expressed by mouse and human colorectal tumors. Cancer Res (2012).

Yu M., et al. RNA sequencing of pancreatic circulating tumour cells implicates WNT signalling in metastasis. Nature (2012).

Zhang B., et al. The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult. Cell Reports 2(1-13): (2012).

Zheng L., et al. Polyploid cells rewire DNA damage response networks to overcome replication stress-induced barriers for tumour progression. Nat Commun 3:815 (2012).


Feeley E. M., et al. IFITM3 inhibits influenza A virus infection by preventing cytosolic entry. PLoS ONE 7(10):E1002337 (2011).

Groger N., et al. Targeted mutation of SLC4A5 induces arterial hypertension and renal metabolic acidosis. Hum Mol Genet (2011).

Honkavuori K. S., et al. Novel picornavirus in Turkey poults with hepatitis. Emerg Infect Dis 17(3):480-7 (2011).

Kang Y. G., et al. Prognostic significance of S100A4 mRNA and protein expression in colorectal cancer. J Surg Oncol (2011).

Lee K., et al. Precursor miR-886, a novel noncoding RNA repressed in cancer, associates with PKR and modulates its activity. Rna 17(6):1076-89 (2011).

Lee K., et al. Expression of AIB1 protein as a prognostic factor in breast cancer. World Journal of Surgical Oncology 9(139) (2011).

Nishimura M. K., et al. Establishment of in situ hybridization technique with mouse single ovum that uses QuantiGene ViewRNA. Memoirs of Institute of Advanced Technology, Kinki University 16(2011. 3):35-42 (2011).

Ting D. T., et al. Aberrant overexpression of satellite repeats in pancreatic and other epithelial cancers. Science 331(6017):593-6 (2011).


Piotrowska J., et al. Stable formation of compositionally unique stress granules in virus-infected cells. J Virol 84(7):3654-65 (2010).


Taylor A. M., et al. Axonal mRNA in uninjured and regenerating cortical mammalian axons. J Neurosci 29(15):4697-707 (2009).

ViewRNA Mentioned in 2011 Reviews

Itzkovitz S., et al. Validating transcripts with probes and imaging technology. Nat Methods 8(4 Suppl):S12-9 (2011).

Uniacke J., Colon-Ramos D., Zerges W. FISH and immunofluorescence staining in Chlamydomonas. Methods Mol Biol 714:15-29 (2011).